Night sky with bright moon through a window curtain.

Physiology, Sleep Stages

Written by: Dr James Pendleton

|

Published

|

Time to read 7 min

Note From Dr. Pendleton


This article is my attempt at a simplified summary of a scientific paper I found interesting. I’m passionate about sharing scientific knowledge in a way that’s accessible to everyone. However, it's important to remember that many scientific studies, including this one, may not directly apply to you, let alone all people. For example, some studies are conducted on animals or involve small sample sizes, which limits the generalizability of the results. My goal is to present the information responsibly and in layman’s terms, so please keep in mind that the findings should be interpreted with care.


Medical Disclaimer: This article is for informational purposes only and is not a substitute for professional medical advice, diagnosis, or treatment. Always seek the advice of your physician or other qualified health provider with any questions you may have regarding a medical condition. Never disregard professional medical advice or delay seeking it because of something you have read on this website. The information in this article is based on a scientific review and should not be used as the sole basis for treatment decisions. Always consult with a healthcare professional before starting any new treatment or therapy.

Overview

The scientific paper Physiology, Sleep Stages by Patel et al. provides a detailed overview of the biological processes involved in human sleep. The authors explore how the body cycles through different sleep phases, specifically non-rapid eye movement (NREM) stages N1 to N3 and rapid eye movement (REM) sleep, each marked by distinct brain wave patterns, muscle tone changes, and eye movements. Patel et al. also examine the cellular and neurotransmitter activity that regulates sleep and wakefulness, describe how sleep patterns change throughout life, and discuss the impact of health conditions like depression, aging, and traumatic brain injury on sleep quality. The paper emphasizes the vital role sleep plays in physical restoration, cognitive functioning, and overall health.

Physiology of Sleep Stages: How Our Bodies and Brains Work During Sleep

The scientific paper "Physiology, Sleep Stages" by Aakash K. Patel, Vamsi Reddy, Karlie R. Shumway, and John F. Araujo explains how the human body cycles through two main phases of sleep: rapid eye movement (REM) and non-rapid eye movement (NREM). NREM sleep is divided into three stages—N1, N2, and N3. Each stage has different brain wave patterns, muscle activity, and eye movements.


Throughout the night, people cycle through all the stages about 4 to 6 times, with each cycle lasting roughly 90 minutes. According to the study, “Each phase and stage of sleep includes variations in muscle tone, brain wave patterns, and eye movements.” Sleep is not just about getting rest—it involves crucial changes in the brain and body that keep us healthy.

Glowing brain on a person

Methodology

This scientific paper is a detailed review of sleep research. It gathers and explains knowledge from clinical studies, laboratory findings, and brain imaging to describe how sleep works. The authors used information from electroencephalograms (EEGs), studies on neurotransmitters, and sleep evaluations like polysomnography. They also included findings on how sleep patterns change across a person’s life and how sleep is affected by conditions like depression and brain injury.

Main Findings

The Structure of Sleep: Stages and Brain Waves

Sleep happens in cycles made up of different stages. NREM sleep includes three stages:


  • Stage N1: Light sleep, where you drift in and out of sleep. Brain waves slow down into theta waves.
  • Stage N2: Deeper sleep with sleep spindles and K-complexes on the EEG. The body’s heart rate slows, and the temperature drops.
  • Stage N3: Also called slow-wave sleep (SWS), this is the deepest sleep with delta waves. It’s the hardest stage to wake up from and where most body repairs happen.

REM sleep is where most dreaming takes place. During REM, the brain is very active, but the body’s muscles are mostly paralyzed to prevent acting out dreams.


The study explains, “The first REM period is short, and as the night progresses, longer periods of REM and decreased time in deep sleep (NREM) occur.”

How Brain Chemicals Control Sleep and Wakefulness

Different sets of brain chemicals control sleep and wakefulness:



These chemicals work in balance, switching on and off to guide us into sleep or keep us awake. The paper states, “Neurochemicals...work together to maintain the waking state,” showing just how coordinated our brain activity must be.

How Sleep Changes Throughout Life

Sleep needs and patterns change as we grow:


  • Newborns sleep up to 18 hours a day, with no real day-night pattern at first.
  • Infants start developing a sleep rhythm around 2–3 months of age.
  • Toddlers and children need about 11–13 hours of sleep, and their deep sleep (N3) is longer.
  • Adolescents need about 9–10 hours of sleep but tend to stay up later due to changes during puberty.
  • Adults experience lighter sleep and less slow-wave sleep as they age. Seniors often wake up earlier and sleep less deeply.

Gender differences also exist: men often have lighter sleep and more awakenings, while women tend to keep deeper sleep patterns longer but report more difficulty falling asleep.

Brain with waves at the bottom.

Sleep Disorders and Health Problems

Several health conditions can disrupt sleep:


  • Sleep apnea reduces time spent in deep and REM sleep, causing daytime tiredness.
  • REM sleep behavior disorder leads people to physically act out dreams because they lose the normal muscle paralysis of REM sleep.
  • Narcolepsy causes sudden sleep attacks, where people skip straight into REM sleep during the day.
  • Sleepwalking (Somnambulism) happens during deep NREM sleep and is most common in children.

Other factors like depression, aging, traumatic brain injury, and medications can all negatively impact sleep quality and the time spent in essential sleep stages.


The study highlights, “Difficulty initiating and maintaining sleep is cited in approximately 43% of elderly individuals,” showing how common sleep problems are in older adults.

Why Sleep Is So Important for Health

Although scientists are still studying exactly why we sleep, current ideas include:


  • Helping the brain grow and mature
  • Supporting learning and memory
  • Clearing out waste from brain cells
  • Saving energy
  • Restoring balance among brain circuits

When people don’t get enough good-quality sleep, they are at greater risk for problems like obesity, diabetes, heart disease, mood disorders, and even memory loss.

Key Organ Systems Involved in Sleep

Several parts of the brain play special roles during sleep:


  • The hypothalamus helps control when you fall asleep.
  • The thalamus blocks sensory input, helping you stay asleep.
  • The pons initiate REM sleep and eye movements.
  • The hippocampus and amygdala help process memories and emotions during dreams.

These brain areas work together to make sure the body moves smoothly through the stages of sleep every night.

Clinical Importance of Sleep and Sleep Disorders

According to the scientific paper, about 50 to 70 million Americans struggle with sleep problems. Sleep deprivation affects thinking, mood, and physical health. People with poor sleep are more likely to suffer from chronic diseases and accidents.


Conditions like insomnia are prevalent and have a big impact on daily life. Effective treatments include cognitive behavioral therapy (CBT) for insomnia and certain medications, such as benzodiazepines and melatonin receptor agonists.


The paper notes, “Insomnia is a complaint of difficulty falling or staying asleep, associated with significant distress or impairment in daytime function,” which shows why sleep care should be a key focus in medicine.

Woman sleeping soundly.

Understanding and Improving Sleep Is Essential for Health

This scientific paper shows that sleep is a complex, essential process involving many brain chemicals, organs, and stages. Sleep patterns change with age, and many health problems can affect how well we sleep.


Understanding how sleep works can help people recognize when something is wrong and seek help. Taking care of your sleep is not a luxury—it’s a critical part of maintaining your overall health and happiness.


If you are having trouble sleeping, talk to a healthcare provider. Good sleep can change your life for the better.

Meet the Author

Dr. James Pendleton

Dr. James Pendleton is a primary care physician specializing in a naturopathic approach to family medicine. He has nurtured a family practice in Seattle, directed a VIP medical center in Abu Dhabi, published several books and scientific articles, and designed innovative nutritional supplements for manufacturers worldwide.

REFERENCES

  1. Aoun, R., Rawal, H., Attarian, H., & Sahni, A. (2019). Impact of traumatic brain injury on sleep: an overview. Nature and science of sleep, 11, 131–140. https://doi.org/10.2147/NSS.S182158
  2. Brinkman JE, Reddy V, Sharma S. Physiology of Sleep. [Updated 2023 Apr 3]. In: StatPearls [Internet]. Treasure Island (FL): StatPearls Publishing; 2025 Jan-. Available from: https://www.ncbi.nlm.nih.gov/books/NBK482512/
  3. Goel, P., & Goel, A. (2024). Exploring the Evolution of Sleep Patterns From Infancy to Adolescence. Cureus, 16(7), e64759. https://doi.org/10.7759/cureus.64759
  4. Institute of Medicine (US) Committee on Sleep Medicine and Research; Colten HR, Altevogt BM, editors. Sleep Disorders and Sleep Deprivation: An Unmet Public Health Problem. Washington (DC): National Academies Press (US); 2006. 2, Sleep Physiology. Available from: https://www.ncbi.nlm.nih.gov/books/NBK19956/
  5. Institute of Medicine (US) Committee on Sleep Medicine and Research; Colten HR, Altevogt BM, editors. Sleep Disorders and Sleep Deprivation: An Unmet Public Health Problem. Washington (DC): National Academies Press (US); 2006. 3, Extent and Health Consequences of Chronic Sleep Loss and Sleep Disorders. Available from: https://www.ncbi.nlm.nih.gov/books/NBK19961/
  6. Patel AK, Reddy V, Shumway KR, et al. Physiology, Sleep Stages. [Updated 2024 Jan 26]. In: StatPearls [Internet]. Treasure Island (FL): StatPearls Publishing; 2025 Jan-. Available from: https://www.ncbi.nlm.nih.gov/books/NBK526132/
  7. Varinthra, P., Anwar, S. N. M. N., Shih, S. C., & Liu, I. Y. (2024). The role of the GABAergic system on insomnia. Tzu chi medical journal, 36(2), 103–109. https://doi.org/10.4103/tcmj.tcmj_243_23